Journal article
A structural biology community assessment of AlphaFold2 applications
M Akdel, DEV Pires, EP Pardo, J Jänes, AO Zalevsky, B Mészáros, P Bryant, LL Good, RA Laskowski, G Pozzati, A Shenoy, W Zhu, P Kundrotas, VR Serra, CHM Rodrigues, AS Dunham, D Burke, N Borkakoti, S Velankar, A Frost Show all
Nature Structural and Molecular Biology | Published : 2022
Abstract
Most proteins fold into 3D structures that determine how they function and orchestrate the biological processes of the cell. Recent developments in computational methods for protein structure predictions have reached the accuracy of experimentally determined models. Although this has been independently verified, the implementation of these methods across structural-biology applications remains to be tested. Here, we evaluate the use of AlphaFold2 (AF2) predictions in the study of characteristic structural elements; the impact of missense variants; function and ligand binding site predictions; modeling of interactions; and modeling of experimental structural data. For 11 proteomes, an average..
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Awarded by Swedish e-Science Research Centre